dotplot
dotplot for enrichment result
dotplot(object, ...) ## S4 method for signature 'enrichResult' dotplot( object, x = "GeneRatio", color = "p.adjust", showCategory = 10, size = NULL, split = NULL, font.size = 12, title = "", label_format = 30, ... ) ## S4 method for signature 'gseaResult' dotplot( object, x = "GeneRatio", color = "p.adjust", showCategory = 10, size = NULL, split = NULL, font.size = 12, title = "", label_format = 30, ... )
object |
input object |
... |
additional parameters |
x |
variable for x-axis, one of 'GeneRatio' or 'Count' |
color |
variable that used to color enriched terms, e.g. pvalue, p.adjust or qvalue |
showCategory |
number of enriched terms to display |
size |
variable that used to scale the sizes of categories |
split |
separate result by 'category' variable |
font.size |
font size |
title |
plot title |
label_format |
a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters |
plot
guangchuang yu
library(DOSE) data(geneList) de <- names(geneList)[1:100] x <- enrichDO(de) dotplot(x)
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