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R

enrichplot

Visualization of Functional Enrichment Result

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.

Functions (27)

barplot.enrichResult

barplot

cnetplot

cnetplot

color_palette

color_palette

dotplot

dotplot

dotplot-methods

dotplot

emapplot

emapplot

emapplot_cluster

emapplot_cluster

fortify

fortify

get_igraph

Get an iGraph object

get_w

A function for get sel_w and net_w

ggtable

ggtable

goplot

goplot

gsInfo

gsInfo

gseadist

gseadist

gseaplot

gseaplot

gseaplot2

gseaplot2

gsearank

gsearank

has_pairsim

Check whether the similarity matrix exists

heatplot

heatplot

list2graph

convert gene IDs to igraph object

pairwise_termsim

pairwise_termsim

plotting.clusterProfile

plotting-clusterProfile

pmcplot

pmcplot

reexports

Objects exported from other packages

ridgeplot

ridgeplot

upsetplot-methods

upsetplot method

wordcloud_i

Get cluster labels

enrichplot

Visualization of Functional Enrichment Result

v1.10.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Erqiang Hu [ctb]
Initial release

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