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goplot

goplot


Description

plot induced GO DAG of significant terms

Usage

goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

## S4 method for signature 'enrichResult'
goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

## S4 method for signature 'gseaResult'
goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

goplot.enrichResult(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

Arguments

x

enrichment result.

showCategory

number of enriched terms to display

color

variable that used to color enriched terms, e.g. pvalue, p.adjust or qvalue

layout

layout of the map

geom

label geom, one of 'label' or 'text'

...

additional parameter

Value

ggplot object

Author(s)

guangchuang yu


enrichplot

Visualization of Functional Enrichment Result

v1.10.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Erqiang Hu [ctb]
Initial release

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