gseaplot
visualize analyzing result of GSEA
gseaplot(x, geneSetID, by = "all", title = "", ...) ## S4 method for signature 'gseaResult' gseaplot( x, geneSetID, by = "all", title = "", color = "black", color.line = "green", color.vline = "#FA5860", ... ) gseaplot.gseaResult( x, geneSetID, by = "all", title = "", color = "black", color.line = "green", color.vline = "#FA5860", ... )
x |
object of gsea result |
geneSetID |
geneSet ID |
by |
one of "runningScore" or "position" |
title |
plot title |
... |
additional parameters |
color |
color of line segments |
color.line |
color of running enrichment score line |
color.vline |
color of vertical line which indicating the maximum/minimal running enrichment score |
plotting function for gseaResult
ggplot2 object
ggplot2 object
Guangchuang Yu
library(DOSE) data(geneList) x <- gseDO(geneList) gseaplot(x, geneSetID=1)
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