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gseaplot2

gseaplot2

Description

GSEA plot that mimic the plot generated by broad institute's GSEA software

Usage

gseaplot2(
  x,
  geneSetID,
  title = "",
  color = "green",
  base_size = 11,
  rel_heights = c(1.5, 0.5, 1),
  subplots = 1:3,
  pvalue_table = FALSE,
  ES_geom = "line"
)

Arguments

x

gseaResult object
geneSetID

gene set ID
title

plot title
color

color of running enrichment score line
base_size

base font size
rel_heights

relative heights of subplots
subplots

which subplots to be displayed
pvalue_table

whether add pvalue table
ES_geom

geom for plotting running enrichment score, one of 'line' or 'dot'

Value

plot

Author(s)

Guangchuang Yu

enrichplot

Visualization of Functional Enrichment Result

v1.10.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Erqiang Hu [ctb]
Initial release

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