applytopup - calling FSL applytopup
A tool for applying and correcting estimated susceptibility induced distortions
applytopup(infile, datain, index, topup_files, out = NULL,
method = c("lsr", "jac"), interp = c("spline", "trilinear"),
verbose = TRUE)
apply_topup(...)
fsl_applytopup(...)infile |
list of names of input image (to be corrected) |
datain |
name of text file with PE directions/times |
index |
list of indicies into –datain of the input image (to be corrected) |
topup_files |
name of field/movements (from topup) |
out |
basename for output (warped) image |
method |
Use jacobian modulation (jac) or least-squares resampling (lsr), default=lsr. |
interp |
Image interpolation model, trilinear or spline. Default spline |
verbose |
Print diagnostic information while running |
... |
arguments passed to |
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