fslr

applytopup - calling FSL applytopup

Extract Image aux.file attribute

Extract Image bitpix attribute

Extract Image cal.max attribute

Extract Image cal.min attribute

Wrapper for getForms with filename

Determine of Q and S forms are consistent

Extract Image data_type attribute

Extract Image datatype attribute

Extract Image descrip attribute

Extract Image dim_ attribute

Download FSL

DTI Fitting Procedure from FSL

Eddy Current Correction

Eddy Current Correction

Enforce Either Qform or Sform is set

Face Removal Mask

FSL FAST

FAST help

Register using FLIRT

FLIRT help

Apply Warp from FLIRT

Register using FNIRT

FNIRT help

Register using FNIRT, but doing Affine Registration as well

Applies FLIRT then FNIRT transformations

FSL Anatomical Processing Script

fsl_anat help

Apply Warp from FNIRT

FSL applywarp help

Get FSL's Standard Data Directory

Scale Affine Matrix using avscale

FSL Bias Correct

Quick Tabulation for logical images

Form clusters, report information about clusters and/or perform cluster-based inference. Wrapper for cluster

Get FSL's Data Directory

Calculate Dice Coefficient of 2 Binary images

Title

Smoothness Estimation using smoothest

Get FSL's Standard Data Directory

Find FSL Version

Absolute Value Image using FSL

fslabs Help

Arc Cosine Transform Image using FSL

fslacos Help

Add Images using FSL

fsladd Help

Logical AND with Images using FSL

Arc Sine Transform Image using FSL

fslasin Help

Arc Tangent Transform Image using FSL

fslatan Help

Use FSL's Brain Extraction Tool (BET)

Help for FSL BET

Binarize Image using FSL

fslbin Help

Binarized Inverse Image using FSL

fslbinv Help

FSL Change file type

fslchfiletype help

FSL Command Wrapper

Image Center of Gravity (FSL)

Cosine Transform Image using FSL

fslcos Help

FSL Copy Geometry

fslcpgeom help

Dilate image using FSL

Get FSL's Directory

Divide Images using FSL

fsldiv Help

Edge Strength Image using FSL

fsledge Help

Image Mean Entropy

Register EPI images to Structural image

Erode image using FSL

fslerode Help

Exponentiate Image using FSL

fslexp Help

Fill image holes

fslfill Help

Fill image holes with dilation then erosion

Get NIfTI header using FSL

FSLhd help

Parse FSL Header

Wrapper for getting fsl help

Index Image using FSL

fslindex Help

Log Transform Image using FSL

fsllog Help

Mask image using FSL

fslmask Help

FSL Maths

FSL Maths Help

Image Mean

Merge images using FSL

FSLMerge help

Get min/max of an image

Multiply Images using FSL

fslmul Help

Replace NaNs in Image using FSL

fslnan Help

Mask NaNs in Image using FSL

fslnanm Help

Perform OR/Union operation on Images using FSL

FSL Orient

fslorient help

FSL Orientation Wrappers

Wrapper for FSL Get Orientation

Add Random Uniform Noise Image using FSL

fslrand Help

Add Random Standard Gaussian Noise Image using FSL

fslrandn Help

Get range of an image

Reciprocal Image using FSL

fslrecip Help

Modulus Remainder of 2 Images using FSL

fslrem Help

FSL Orient to MNI

fslreorient2std help

FSL Robust Field of View

FSL Robust Field of View Help

FSL ROI

Image Standard Deviation

Sine Transform Image using FSL

fslsin Help

FSL Slice Timing Correction

Gaussian smooth image using FSL

fslsmooth Help

Smooth Image Within a Mask Only

Split images using FSL

FSL Split help

Square Image using FSL

fslsqr Help

Square Root Image using FSL

fslsqrt Help

FSL Stats

FSL Stats Help

Subtract Images using FSL

fslsub Help

Subsample image by factor of 2

fslsub2 Help

FSL Sum

FSL Swap Dimensions

fslswapdim help

Tangent Transform Image using FSL

fsltan Help

Threshold an image

fslthresh Help

Get value from FSL header

fslval help

Open image in FSLView

FSLView help

FSL Volume in mL (or cubic centimeters)

Image Volume

Perform XOR/Exclusive Or operation on Images using FSL

Create command declaring FSLDIR

Determine FSL output type

Determine extension of image based on FSLOUTPUTTYPE

Get Q and S Forms of orientation matrix

Face Removal Mask using "Quickshear Defacing for Neuroimages" (Schimke et al. 2011)

Logical check if FSL is accessible

Extract Image intent_code attribute

Extract Image intent_name attribute

Extract Image intent_p1 attribute

Extract Image intent_p2 attribute

Extract Image intent_p3 attribute

Convert a Transformation

Extract Image magic attribute

FSL Motion Correction

MCFLIRT help

Run MELODIC ICA

MELODIC help

Mid-Sagittal Plane Alignment

Construct MNI Filename

Read MNI Filename

MRI Defacer

Extract NIfTI 3D Image Orientation

Parse output from avscale

Extract Image pixdim attribute

Probabilistic diffusion tractography with multiple fibre orientations

Extract Image qform_code attribute

Read FSL Transformation

Read NIfTI file reoriented to RPI

Reverse Reorientation an Image to RPI orientation

Reorient an Image to RPI orientation

Run FIRST All

Run FIRST All Help

Extract Image scl_inter attribute

Extract Image scl_slope attribute

Extract Image sform_code attribute

Extract Image sizeof_hdr attribute

Extract Image slice_code attribute

Extract Image slice_duration attribute

Extract Image slice_end attribute

Extract Image slice_start attribute

FSL SUSAN noise reduction

FSL SUSAN Help

Extract Image toffset attribute

topup - calling FSL topup

Extract Image vox_offset attribute

Bayesian Estimation of Diffusion Parameters Obtained using Sampling Techniques with Crossing Fibers