fslr: fsl_anat – R documentation

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fsl_anat

FSL Anatomical Processing Script

This function calls fsl_anat from FSL

fsl_anat(file, modality = c("T1", "T2", "PD"), outdir = NULL,
  intern = FALSE, opts = "", verbose = TRUE, ...)

`file`	(character) image to be manipulated, should be full path
`modality`	(character) Modality of Image to be run
`outdir`	(character) output directory, if none specified, will default to `dirname(file)`
`intern`	(logical) to be passed to `system`
`opts`	(character) operations to be passed to `fsl_anat`
`verbose`	(logical) print out command before running
`...`	options passed to `checkimg`

Result from system command, depends if intern is TRUE or FALSE.

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release