fslr: fsl_biascorrect – R documentation

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fsl_biascorrect

FSL Bias Correct

This function wraps a call to fast that performs bias correction

fsl_biascorrect(file, outfile = NULL, retimg = TRUE,
  reorient = FALSE, intern = FALSE, opts = "", verbose = TRUE,
  remove.seg = TRUE, ...)

`file`	(character) image to be manipulated
`outfile`	(character) resultant image name (optional)
`retimg`	(logical) return image of class nifti
`reorient`	(logical) If retimg, should file be reoriented when read in? Passed to `readnii`.
`intern`	(logical) to be passed to `system`
`opts`	(character) operations to be passed to `fast`
`verbose`	(logical) print out command before running
`remove.seg`	(logical) Should segmentation from FAST be removed?
`...`	additional arguments passed to `readnii`.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release