Use FSL's Brain Extraction Tool (BET)
This function calls bet to extract a brain
from an image, usually for skull stripping.
fsl_bet(..., outfile = tempfile(fileext = ".nii.gz"), retimg = FALSE)
fslbet(infile, outfile = NULL, retimg = TRUE, reorient = FALSE,
intern = FALSE, opts = "", betcmd = c("bet2", "bet"),
verbose = TRUE, ...)... |
additional arguments passed to |
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
infile |
(character) input filename |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
opts |
(character) additional options to |
betcmd |
(character) Use |
verbose |
(logical) print out command before running |
character or logical depending on intern
Functions with underscores have different defaults and will return an output filename, so to be used for piping
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.