fslr: fslchfiletype – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

fslchfiletype

FSL Change file type

This function calls fslchfiletype

fslchfiletype(file, filetype = "NIFTI_GZ", outfile = NULL,
  retimg = TRUE, reorient = FALSE, intern = FALSE, verbose = TRUE,
  ...)

`file`	(character) image to be manipulated
`filetype`	filetype to change image to
`outfile`	Output filename. If NULL, will overwrite input file
`retimg`	(logical) return image of class nifti
`reorient`	(logical) If `retimg`, should file be reoriented when read in? Passed to `readnii`.
`intern`	(logical) to be passed to `system`
`verbose`	(logical) print out command before running
`...`	additional arguments passed to `readnii`.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release