fslr: fslcpgeom – R documentation

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fslcpgeom

FSL Copy Geometry

This function calls fslcpgeom

fslcpgeom(file, file_with_header, retimg = TRUE, reorient = FALSE,
  intern = FALSE, opts = "", verbose = TRUE, ...)

`file`	(character) image to be manipulated
`file_with_header`	image with header to be copied over
`retimg`	(logical) return image of class nifti
`reorient`	(logical) If retimg, should file be reoriented when read in? Passed to `readnii`.
`intern`	(logical) to be passed to `system`
`opts`	(character) operations to be passed to `fslmaths`
`verbose`	(logical) print out command before running
`...`	additional arguments passed to `readnii`.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release