Fill image holes with dilation then erosion
This function calls fslmaths to dilate an image, then calls
it again to erode it.
fslfill2(file, outfile = NULL, kopts = "", remove.ends = TRUE, refill = TRUE, retimg = TRUE, reorient = FALSE, intern = FALSE, verbose = TRUE, ...)
file |
(character) filename of image to be filled |
outfile |
(character) name of resultant filled file |
kopts |
(character) Options passed for kernel before erosion/dilation |
remove.ends |
(logical) Remove top and bottom dilation. |
refill |
(logical) Run |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
verbose |
(logical) print out command before running |
... |
additional arguments passed to |
character or logical depending on intern
This function binarizes the image before running.
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.