fslr: fslorient – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

fslorient

FSL Orient

This function calls fslorient

fslorient(file, retimg = TRUE, reorient = FALSE, intern = FALSE,
  opts = "", verbose = TRUE, ...)

`file`	(character) image to be manipulated
`retimg`	(logical) return image of class nifti
`reorient`	(logical) If `retimg`, should file be reoriented when read in? Passed to `readnii`.
`intern`	(logical) to be passed to `system`
`opts`	(character) operations to be passed to `fslorient`
`verbose`	(logical) print out command before running
`...`	additional arguments passed to `readnii`.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release