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rpi_orient

Reorient an Image to RPI orientation

Description

This function uses fslswapdim to reorient an image

Usage

rpi_orient(file, verbose = TRUE)

rpi_orient_file(file, verbose = TRUE)

is_rpi(file, verbose = FALSE)

is.rpi(file, verbose = FALSE)

Arguments

file

Object of class nifti or character path
verbose

print diagnostic messages

Value

List of 3 elements

  • img: Reoriented image of class nifti

  • convention: Convention (Neurological/Radiological) of original image

  • orientation: Original image orientations

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1
GPL-3
Authors
John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Initial release

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