fslr: run_first_all – R documentation

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run_first_all

Run FIRST All

Wrapper for run_first_all from FSL for FIRST analysis segmentation of subcortical structures

run_first_all(img, oprefix = tempfile(), brain_extracted = FALSE,
  structures = NULL, affine = NULL, opts = "", verbose = TRUE)

`img`	pecifies the input image (T1-weighted)
`oprefix`	specifies the output image basename (extensions will be added to this)
`brain_extracted`	specifies that the input image has been brain extracted
`structures`	a restricted set of structures to be segmented
`affine`	specifies the affine registration matrix to standard space (optional)
`opts`	(character) operations to be passed to `run_first_all`
`verbose`	(logical) print out command before running

List of results, including result of system and some output files

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

v2.24.1

GPL-3

Authors

John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)

Initial release