haplo.stats

Compute Generalized Inverse of Input Matrix

Analysis of variance for haplo.glm model fit

Power and sample size for the chi-square distribution

Power and sample size for the F distribution

Find beta coefficients for risk haplotypes, for specified r2

Fitted values from haplo.glm fit

Counts of Total Haplotype Pairs Produced by Genotypes

convert genotype matrix from 1-column 2-column

Get a list of objects for haplotype pairs

Set of haplotypes and frequencies for power and sample size calculations

Haplotype Association Analysis in a Case-Control design

Build a design matrix for haplotypes

EM Computation of Haplotype Probabilities, with Progressive Insertion of Loci

Create the Control Parameters for the EM Computation of Haplotype Probabilities, with Progressive Insertion of Loci

Compute engine for haplotype EM algorithm

GLM Regression of Trait on Ambiguous Haplotypes

Create list of control parameters for haplo.glm

Frequencies for Haplotypes by Grouping Variable

Integer Rank Codes for Haplotypes

Sets up a model frame for haplo.glm

Compute either power or sample size for haplotype associations in a case-control study.

Compute either power or sample size for haplotype associations with a quantitative trait.

Search for a trait-locus by sliding a fixed-width window over each marker locus and scanning all possible haplotype lengths within the window

Score Statistics for Association of Traits with Haplotypes

Merge haplo.score And haplo.group Objects

Score Statistics for Association of Traits with Haplotypes

HLA Loci and Serologic Response to Measles Vaccination

Internal functions for the HaploStats package. See the help file for the main functions (haplo.em, haplo.score, haplo.glm) for details on some of these functions.

Find Location from Mouse Clicks and Print Haplotypes on Plot

Creates an object of class "locus"

Louis Information for haplo.glm

Remove rows with NA in covariates, but keep genotypes with NAs

Plot Haplotype Frequencies versus Haplotype Score Statistics

Plot a haplo.score.slide Object

Plot a seqhap object

Print a haplo.cc object

Print contents of a haplo.em object

Print a haplo.group object

Print a haplo.scan object

Print a haplo.score object

Print a haplo.score.merge object

Print the contents of a haplo.score.slide object

Print a nice banner

Accessing residuals for haplo.glm fit

Create the list of control parameters for simulations in haplo.score

Sequential Haplotype Scan Association Analysis for Case-Control Data

Simulated data for seqhap examples

Create a group of locus objects from a genotype matrix, assign to 'model.matrix' class.

Summarize contents of a haplo.em object

Print and summary of a haplo.glm object

Summarize Full Haplotype Enumeration on Genotype Matrix

variance-covariance matrix of a fitted haplo.glm object

consistency checks for x.linked locus