haplo.stats: summary.haplo.glm – R documentation

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haplo.stats

summary.haplo.glm

Print and summary of a haplo.glm object

Description

Do print and summary as in regular glm, then display extra information on haplotypes used in the model fit

Usage

## S3 method for class 'haplo.glm'
summary(object, show.all.haplo=FALSE,
                            show.missing=FALSE, ...)
## S3 method for class 'summary.haplo.glm'
print(x, digits = max(getOption("digits")-3,3), ...)

Arguments

`x`	A haplo.glm object
`object`	A haplo.glm object
`show.all.haplo`	Logical. If TRUE, print all haplotypes considered in the model.
`show.missing`	Logical. If TRUE, print number of rows removed because of missing values (NA) in y or x-covariates, or all alleles missing in geno
`digits`	Number of numeric digits to print.
`...`	Optional arguments for summary method

Details

Uses print.glm for the first section, then prints information on the haplotypes.

Value

If print is assigned, the object contains a list with the coefficient and haplotype data.frames which are printed by the method.