marray: maDotsDefaults – R documentation

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maDotsDefaults

Replace graphical default parameters by user supplied parameters

Description

This function may be used to compare default graphical parameters for microarray diagnostic plots to user supplied parameters given in .... User supplied parameters overwrite the defaults. It is used in maBoxplot, maPlot, and maImage.

Usage

maDotsDefaults(dots, defaults)

Arguments

`dots`	List of user supplied parameters, e.g. from `list(...)`.
`defaults`	List of default parameters, e.g. from the function `maDefaultPar`.

Value

args

List of graphical parameters.

Author(s)

Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.

References

S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.

Examples

dots<-list(xlab="X1", ylab="Y1")
defaults<-list(xlab="X1", ylab="Y2", col=2)
pars<-maDotsDefaults(dots, defaults)

do.call("plot",c(list(x=1:10), pars))

marray

Exploratory analysis for two-color spotted microarray data

v1.68.0

LGPL

Authors

Yee Hwa (Jean) Yang <jeany@maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Initial release

2009-08-15