marray

Boxplots for cDNA microarray spot statistics

Subsetting methods for microarray objects

Combine marrayRaw, marrayNorm or marrayInfo Objects

Verifying the order between intensities matrix and target file information

Coerce an object to belong to a given microarray class

Retrieve the Dimensions of an marrayRaw, marrayNorm or marrayInfo Object

Find ID when given an accession number

Display gene list as a HTML page

Color image for cDNA microarray spot statistics

Stratified bivariate robust local regression

Boxplots for cDNA microarray spot statistics

Calibration bar for color images

Generate grid and spot matrix coordinates

Generate spot indices

Generate a marrayLayout object

Weights for composite normalization

Generate plate IDs

Convert grid and spot matrix coordinates to spot indices

Default graphical parameters for microarray objects

Replace graphical default parameters by user supplied parameters

Replace default arguments of a function by user supplied values

Generating a vector recording the control status of the spotted probe sequences.

Table of spot coordinates and gene names

Color image for cDNA microarray spot statistics

Color image for cDNA microarray spot statistics

Convert spot indices to grid and spot matrix coordinates

Add a legend to a plot

Stratified univariate robust local regression

Add smoothed fits to a plot

Stratified MAD calculation

Stratified median calculation

Basic Statistical Functions for Handling Missing Values

Simple location and scale normalization function

2D spatial location normalization function

Intensity dependent location normalization function

MAD scale normalization function

Main function for location and scale normalization of cDNA microarray data

Median location normalization function

Simple scale normalization function

Convert a numeric vector of indices to a logical vector

Microarray color palette

Scatter-plots for cDNA microarray spot statistics

Scatter-plots with fitted curves and text

Select genes according to the values of a few different statistics

Highlight points on a plot

Identify extreme values

Changing signs for two sample analysis

Creating URL strings for external database links

Internal marray functions

Class "marrayInfo", description of target samples or spotted probe sequences

Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays

Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data

Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data

Determine the operon oligo set ID

Scatter-plots for cDNA microarray spot statistics

Printing summary methods for microarray objects

Reading GenePix Gal file

Create objects of class marrayInfo

Create objects of class marrayLayout

Create objects of class "marrayRaw"

Remove missing values

Show Large Data Object - class

Rank genes according to the value of a statistic.

Sort Genes According to the Value of a Statistic

Gene expression data from Swirl zebrafish cDNA microarray experiment

Data Output

Data Output

Data Output