Reading GenePix Gal file
Reading a standard Gal file containing gene information.
read.Galfile(galfile, path = ".", info.id = c("ID", "Name"),
layout.id =c(Block="Block", Row="Row", Column="Column"),
labels = "ID", notes = "", sep = "\t", skip = NULL, ncolumns=4, ...)galfile |
a character string representing the Gal file. |
path |
a character string representing the data directory. By default this is set to the current working directory ("."). |
info.id |
the column numbers or names in ‘fname’ that contain the required information. |
layout.id |
the column names in ‘fname’ that specified the printer layout information. |
labels |
the column number in |
notes |
object of class character, vector of explanatory text |
sep |
the field separator character. Values on each line of the file are separated by this character. The default is to read a tab delimited file. |
skip |
the number of lines of the data file to skip before beginning to read data. |
ncolumns |
an integer representing the number of columns of sub-array (print-tips) on a slides. |
... |
further arguments to |
gnames |
An object of class |
layout |
An object of class |
Yee Hwa (Jean) Yang
library(marray)
datadir <- system.file("swirldata", package="marray")
try <- read.Galfile(galfile="fish.gal", path=datadir)
names(try)
try$layout
try$gnamesPlease choose more modern alternatives, such as Google Chrome or Mozilla Firefox.