pedprobr: genoCombinations – R documentation

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genoCombinations

Genotype combinations

Description

Returns the possible genotype combinations in a pedigree, given partial marker data. This function is mainly for internal use.

Usage

genoCombinations(x, partialmarker, ids, make.grid = TRUE)

Arguments

`x`	a `ped()` object.
`partialmarker`	a `marker()` object compatible with `x`.
`ids`	a vector with ID labels of one or more pedigree members.
`make.grid`	a logical indicating if the result should be simplified to a matrix.

Value

If make.grid = FALSE (the default) the function returns a list of integer vectors, one vector for each element of ids. Each integer represents a genotype, in the form of a row number of the matrix allGenotypes(n), where n is the number of alleles of the marker.

If make.grid = TRUE, the cartesian product of the vectors is taken, resulting in a matrix with one column for each element of ids.

pedprobr

Probability Computations on Pedigrees

v0.5.0

GPL-3

Authors

Magnus Dehli Vigeland [aut, cre] (<https://orcid.org/0000-0002-9134-4962>)

Initial release