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pedprobr

Probability Computations on Pedigrees

An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the ped suite, a collection of packages for pedigree analysis in R, based on 'pedtools' for handling pedigrees and markers. Mutation modelling is supported by the 'pedmut' package.

Functions (10)

Hardy-Weinberg probabilities

allGenotypes

Genotype matrix

genoCombinations

Genotype combinations

Pedigree likelihood

lumpAlleles

Allele lumping

Pedigree likelihood computed by MERLIN

oneMarkerDistribution

Genotype distribution for a single marker

pedprobr: Probability Computations on Pedigrees

setMutationModel

Set a mutation model

twoMarkerDistribution

Genotype distribution for two linked markers

pedprobr

Probability Computations on Pedigrees

v0.5.0

GPL-3

Authors

Magnus Dehli Vigeland [aut, cre] (<https://orcid.org/0000-0002-9134-4962>)

Initial release

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