qpcR

Akaike's second-order corrected Information Criterion

Cy0 alternative to threshold cycles as in Guescini et al. (2008)

(K)inetic (O)utlier (D)etection using several methods

Formal lack-Of-Fit test of a nonlinear model against a one-way ANOVA model

Calculation of qPCR efficiency by the 'linear regression of efficiency' method

Allen's PRESS (Prediction Sum-Of-Squares) statistic, aka P-square

Root-mean-squared-error of a fitted model

Residual sum-of-squares of a fitted model

R-square value of a fitted model

Adjusted R-square value of a fitted model

Calculation of Akaike weights/relative likelihoods/delta-AICs

Calculation of qPCR efficiency using dilution curves and replicate bootstrapping

The amplification efficiency curve of a fitted object

Calculation of qPCR efficiency and other important qPCR parameters

Evidence ratio for model comparisons with AIC, AICc or BIC

Comparison of all sigmodal models within the exponential region

Calculation of PCR efficiency by fitting an exponential model

The chi-square goodness-of-fit

Batch calculation of qPCR fit parameters/efficiencies/threshold cycles with simple output, especially tailored to high-throughput data

Outlier summary for objects of class 'modlist' or 'replist'

Calculation of likelihood ratios for nested models

The maxRatio method as in Shain et al. (2008)

Melting curve analysis with (iterative) Tm identification and peak area calculation/cutoff

Calculation of the 'midpoint' region

Create nonlinear models from a dataframe and coerce them into a list

Sigmoidal model selection by different criteria

Parameters that can be changed to tweak the kinetic outlier methods

Summarize measures for the goodness-of-fit

Batch calculation of qPCR efficiency and other qPCR parameters

Bootstrapping and jackknifing qPCR data

Workhorse function for qPCR model fitting

Advanced qPCR data import function

Simple qPCR data import function (i.e. from text files or clipboard)

Combinatorial elimination of plateau and ground phase cycles

Simulation of sigmoidal qPCR data with goodness-of-fit analysis

Plotting qPCR data with fitted curves

Value prediction from a fitted qPCR model

Error propagation using different methods

Display news and changes of qpcR package versions

The (published) datasets implemented in qpcR

The nonlinear/mechanistic models implemented in qpcR

Calculation of ratios in a batch format from external PCR parameters

Calculation of ratios in a batch format for multiple genes/samples

Calculation of ratios from qPCR runs with/without reference genes

Averaging of multiple reference genes

Amalgamation of single data models into a model containing replicates

Residual variance of a fitted model

An (overlayed) residuals barplot

Calculation of qPCR efficiency by the 'window-of-linearity' method

Calculation of the qPCR takeoff point

Updating and refitting a qPCR model