qtl2: sdp2char – R documentation

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sdp2char

Convert strain distribution patterns to character strings

Convert a vector of numeric codes for strain distribution patterns to character strings.

sdp2char(sdp, n_strains = NULL, strains = NULL)

`sdp`	Vector of strain distribution patterns (integers between 1 and 2^n-2 where n is the number of strains.
`n_strains`	Number of founder strains (if missing but `strains` is provided, we use the length of `strains`)
`strains`	Vector of single-letter codes for the strains

Vector of character strings with the two groups of alleles separated by a vertical bar (|).

sdp <- c(m1=1, m2=12, m3=240)
sdp2char(sdp, 8)
sdp2char(sdp, strains=c("A", "B", "1", "D", "Z", "C", "P", "W"))

Quantitative Trait Locus Mapping in Experimental Crosses

v0.24

GPL-3

Authors

Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>), R Core Team [ctb]

Initial release

2020-12-16