Get Full Event Hierarchy of a Species
This function will retrieve the full Events hierarchy of your provided species. Directly under each species, each child element is a "top Level Pathway". You can traverse the events tree down by following the "children" element.
rba_reactome_event_hierarchy(species, ...)
species |
Numeric or Character: NCBI Taxonomy identifier (Human Taxonomy
ID is 9606.) or species name (e.g. "Homo sapiens"). Refer to
|
... |
rbioapi option(s). Refer to |
By Reactome's definition, Events are the building blocks of biological processes and could be of two main classes: "Pathway" or "Reaction-like events". The events are organized in a hierarchical structure; and each event could be child or parent to another event; The hierarchy will always begin with a "Top level pathway" event. Also note that a given event could be part of more that one hierarchies.
List which is a representation of the species's events hierarchy described in the "Details section".
"GET https://reactome.org/ContentService/data/eventsHierarchy/species"
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
Other "Reactome Content Service - Queries Related to Events":
rba_reactome_event_ancestors()
rba_reactome_event_hierarchy("Homo sapiens")
rba_reactome_event_hierarchy(9606)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.