Get Lowest Common Ancestor (LCA) of Two Taxonomy Nodes
Use this function to retrieve lowest common ancestor (LCA) of two taxonomy nodes in UniProt Taxonomy database
rba_uniprot_taxonomy_lca(ids, ...)
ids |
(numeric) Numeric vector of NCBI taxonomic identifiers, with minimum length of two. |
... |
rbioapi option(s). Refer to |
A list with UniProt taxonomy information of your provided taxonomy elements.
"GET https://ebi.ac.uk/proteins/api/ancestor/ids"
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy_lineage(),
rba_uniprot_taxonomy_name(),
rba_uniprot_taxonomy_path(),
rba_uniprot_taxonomy_relationship(),
rba_uniprot_taxonomy()
rba_uniprot_taxonomy_lca(c(9606,10090,9823,7712))
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