Traverse UniProt Taxonomic Tree Path
Using this function you can retrieve nodes that are located in the top or the bottom of your provided node in UniProt Taxonomy database tree
rba_uniprot_taxonomy_path(id, direction, depth = 5, ...)
id |
(numeric) a NCBI taxonomic identifier |
direction |
direction of the taxonomic path, either "TOP" or "BOTTOM". |
depth |
(numeric) How many levels should be traversed on the taxonomic tree? (from 1 to 5, default = 5) |
... |
rbioapi option(s). Refer to |
a nested list containing the node which are in the path specified by your provided argument in the UniProt taxonomic tree.
"GET https://ebi.ac.uk/proteins/api/path"
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy_lca(),
rba_uniprot_taxonomy_lineage(),
rba_uniprot_taxonomy_name(),
rba_uniprot_taxonomy_relationship(),
rba_uniprot_taxonomy()
rba_uniprot_taxonomy_path(id = 9606, direction = "TOP", depth = 3) rba_uniprot_taxonomy_path(id = 207598, direction = "BOTTOM", depth = 3)
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