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modelorg_irrev-class

Class for Metabolic Networks in Irreversible Format.


Description

Structure of the class "modelorg_irrev". Objects of that class are returned by the function mod2irrev.

Objects from the Class

Objects can be created by calls of the function modelorg_irrev:

test <- modelorg_irrev(id = "foo", name = "bar").

Slots

irrev:

Object of class "logical" indicating if the model is in irreversible format.

matchrev:

Object of class "integer" matching of forward and backward reactions of a reversible reaction.

rev2irrev:

Object of class "matrix" containing the reaction id's of the corresponding reactions in irreversible format.

irrev2rev:

Object of class "integer" containing the reaction id's of the corresponding reaction in reversible format.

Extends

Class "modelorg", directly.

Methods

irrev<-:

signature(object = "modelorg_irrev"): sets the irrev slot.

irrev:

signature(object = "modelorg_irrev"): gets the irrev slot.

matchrev<-:

signature(object = "modelorg_irrev"): sets the matchrev slot.

matchrev:

signature(object = "modelorg_irrev"): gets the matchrev slot.

rev2irrev<-:

signature(object = "modelorg_irrev"): sets the rev2irrev slot.

rev2irrev:

signature(object = "modelorg_irrev"): gets the rev2irrev slot.

irrev2rev<-:

signature(object = "modelorg_irrev"): sets the irrev2rev slot.

irrev2rev:

signature(object = "modelorg_irrev"): gets the irrev2rev slot.

Author(s)

Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>

See Also

Examples

showClass("modelorg_irrev")

sybil

Efficient Constrained Based Modelling

v2.1.5
GPL-3 | file LICENSE
Authors
Mayo Roettger [cre], Gabriel Gelius-Dietrich [aut], C. Jonathan Fritzemeier [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb]
Initial release
2019-03-07

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