xpose4: ind.plots.wres.qq – R documentation

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ind.plots.wres.qq

Quantile-quantile plots of weighted residuals for each individual in an Xpose data object, for Xpose 4

Description

This is a compound plot consisting of QQ plots of the distribution of weighted residuals (any weighted residual produced by NONMEM) for every individual in the dataset. The function is a wrapper encapsulating arguments to the xpose.plot.qq function.

Usage

ind.plots.cwres.qq(object, wres = "cwres", ...)

ind.plots.wres.qq(
  object,
  main = "Default",
  wres = "wres",
  layout = c(4, 4),
  inclZeroWRES = FALSE,
  subset = xsubset(object),
  scales = list(cex = 0.7, tck = 0.5),
  aspect = "fill",
  force.by.factor = TRUE,
  ids = F,
  as.table = TRUE,
  type = "o",
  pch = object@Prefs@Graph.prefs$pch,
  col = object@Prefs@Graph.prefs$col,
  cex = object@Prefs@Graph.prefs$cex,
  abllty = object@Prefs@Graph.prefs$abllty,
  abllwd = object@Prefs@Graph.prefs$abllwd,
  ablcol = object@Prefs@Graph.prefs$ablcol,
  prompt = FALSE,
  main.cex = 0.9,
  mirror = NULL,
  max.plots.per.page = 1,
  ...
)

Arguments

`object`	An xpose.data object.
`wres`	Which weighted residual should we plot? Defaults to the WRES.
`...`	Other arguments passed to `link{xpose.plot.qq}`.
`main`	The title of the plot. If `"Default"` then a default title is plotted. Otherwise the value should be a string like `"my title"` or `NULL` for no plot title.
`layout`	A list giving the layout of the graphs on the plot, in columns and rows. The default is 4x4.
`inclZeroWRES`	Logical value indicating whether rows with WRES=0 is included in the plot. The default is FALSE.
`subset`	A string giving the subset expression to be applied to the data before plotting. See `xsubset`.
`scales`	See `xpose.plot.qq`.
`aspect`	See `xpose.plot.qq`.
`force.by.factor`	See `xpose.plot.qq`.
`ids`	See `xpose.plot.qq`.
`as.table`	See `xpose.plot.qq`.
`type`	1-character string giving the type of plot desired. The following values are possible, for details, see 'plot': '"p"' for points, '"l"' for lines, '"o"' for over-plotted points and lines, '"b"', '"c"') for (empty if '"c"') points joined by lines, '"s"' and '"S"' for stair steps and '"h"' for histogram-like vertical lines. Finally, '"n"' does not produce any points or lines.
`pch`	The plotting character, or symbol, to use. Specified as an integer. See R help on `points`. The default is an open circle.
`col`	The color for lines and points. Specified as an integer or a text string. A full list is obtained by the R command `colours()`. The default is blue (col=4).
`cex`	The amount by which plotting text and symbols should be scaled relative to the default. 'NULL' and 'NA' are equivalent to '1.0'.
`abllty`	Line type of the line of identity.
`abllwd`	Line width of the line of identity.
`ablcol`	Line colour of the line of identity.
`prompt`	Specifies whether or not the user should be prompted to press RETURN between plot pages. Default is FALSE.
`main.cex`	The size of the title.
`mirror`	Mirror plots are not yet implemented in this function and this argument must contain a value of `NULL`
`max.plots.per.page`	Maximum number of plots per page

Details

Matrices of Q-Q plots of weighted residuals in each included individual are displayed.

A wide array of extra options controlling Q-Q plots are available. See xpose.plot.qq for details.

Value

Returns a compound plot comprising QQ plots of weighted residuals conditioned on individual.

Functions

ind.plots.cwres.qq: Q-Q plots of conditional weighted residuals for each individual

Author(s)

E. Niclas Jonsson, Mats Karlsson, Justin Wilkins & Andrew Hooker

Other specific functions: absval.cwres.vs.cov.bw(), absval.cwres.vs.pred.by.cov(), absval.cwres.vs.pred(), absval.iwres.cwres.vs.ipred.pred(), absval.iwres.vs.cov.bw(), absval.iwres.vs.idv(), absval.iwres.vs.ipred.by.cov(), absval.iwres.vs.ipred(), absval.iwres.vs.pred(), absval.wres.vs.cov.bw(), absval.wres.vs.idv(), absval.wres.vs.pred.by.cov(), absval.wres.vs.pred(), absval_delta_vs_cov_model_comp, addit.gof(), autocorr.cwres(), autocorr.iwres(), autocorr.wres(), basic.gof(), basic.model.comp(), cat.dv.vs.idv.sb(), cat.pc(), cov.splom(), cwres.dist.hist(), cwres.dist.qq(), cwres.vs.cov(), cwres.vs.idv.bw(), cwres.vs.idv(), cwres.vs.pred.bw(), cwres.vs.pred(), cwres.wres.vs.idv(), cwres.wres.vs.pred(), dOFV.vs.cov(), dOFV.vs.id(), dOFV1.vs.dOFV2(), data.checkout(), dv.preds.vs.idv(), dv.vs.idv(), dv.vs.ipred.by.cov(), dv.vs.ipred.by.idv(), dv.vs.ipred(), dv.vs.pred.by.cov(), dv.vs.pred.by.idv(), dv.vs.pred.ipred(), dv.vs.pred(), gof(), ind.plots.cwres.hist(), ind.plots(), ipred.vs.idv(), iwres.dist.hist(), iwres.dist.qq(), iwres.vs.idv(), kaplan.plot(), par_cov_hist, par_cov_qq, parm.vs.cov(), parm.vs.parm(), pred.vs.idv(), ranpar.vs.cov(), runsum(), wres.dist.hist(), wres.dist.qq(), wres.vs.idv.bw(), wres.vs.idv(), wres.vs.pred.bw(), wres.vs.pred(), xpose.VPC.both(), xpose.VPC.categorical(), xpose.VPC(), xpose4-package

Examples

ind.plots.cwres.qq(simpraz.xpdb,subset="ID<18")

xpose4

Diagnostics for Nonlinear Mixed-Effect Models

v4.7.1

LGPL (>= 3)

Authors

Andrew C. Hooker [aut, cre, cph], Mats O. Karlsson [aut, cph], Justin J. Wilkins [aut], E. Niclas Jonsson [aut, trl, cph], Ron Keizer [ctb] (functionality for bootstrap of GAM and SCM)

Initial release