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pullSegSiteGeno

Pull seg site genotypes

Description

Retrieves genotype data for all segregating sites

Usage

pullSegSiteGeno(pop, chr = NULL, simParam = NULL)

Arguments

pop

an object of Pop-class or RawPop-class
chr

a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved.
simParam

an object of SimParam

Value

Returns a matrix of genotypes

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)

#Create population
pop = newPop(founderPop, simParam=SP)
pullSegSiteGeno(pop, simParam=SP)
AlphaSimR

Breeding Program Simulations

v0.13.0
MIT + file LICENSE
Authors
Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [aut] (<https://orcid.org/0000-0001-8008-2787>), John Hickey [aut] (<https://orcid.org/0000-0001-5675-3974>), Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), David Wilson [ctb]
Initial release
2020-10-20

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