Pull seg site haplotypes
Retrieves haplotype data for all segregating sites
pullSegSiteHaplo(pop, haplo = "all", chr = NULL, simParam = NULL)
pop |
an object of |
haplo |
either "all" for all haplotypes or an integer for a single set of haplotypes. Use a value of 1 for female haplotyes and a value of 2 for male haplotypes. |
chr |
a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved. |
simParam |
an object of |
Returns a matrix of haplotypes
#Create founder haplotypes founderPop = quickHaplo(nInd=10, nChr=1, segSites=15) #Set simulation parameters SP = SimParam$new(founderPop) SP$addTraitA(10) SP$addSnpChip(5) #Create population pop = newPop(founderPop, simParam=SP) pullSegSiteHaplo(pop, simParam=SP)
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