Print run summary in Xpose 4
Function to build Xpose run summaries.
runsum( object, dir = "", modfile = paste(dir, "run", object@Runno, ".mod", sep = ""), listfile = paste(dir, "run", object@Runno, ".lst", sep = ""), main = NULL, subset = xsubset(object), show.plots = TRUE, txt.cex = 0.7, txt.font = 1, show.ids = FALSE, param.table = TRUE, txt.columns = 2, force.wres = FALSE, ... )
object |
An xpose.data object. |
dir |
The directory to look for the model and output file of a NONMEM run. |
modfile |
The name of the NONMEM control stream associated with the current run. |
listfile |
The name of the NONMEM output file associated with the current run. |
main |
A string giving the main heading. |
subset |
A string giving the subset expression to be applied to the
data before plotting. See |
show.plots |
Logical indicating if GOF plots should be shown in the run summary. |
txt.cex |
Number indicating the size of the txt in the run summary. |
txt.font |
Font of the text in the run summary. |
show.ids |
Logical indicating if IDs should be plotted in the plots for the run summary. |
param.table |
Logical indicating if the parameter table should be shown in the run summary. |
txt.columns |
The number of text columns in the run summary. |
force.wres |
Plot the WRES even if other residuals are available. |
... |
Other arguments passed to the various functions. |
A compound plot containing an Xpose run summary is created.
Niclas Jonsson and Andrew Hooker
Other specific functions:
absval.cwres.vs.cov.bw(),
absval.cwres.vs.pred.by.cov(),
absval.cwres.vs.pred(),
absval.iwres.cwres.vs.ipred.pred(),
absval.iwres.vs.cov.bw(),
absval.iwres.vs.idv(),
absval.iwres.vs.ipred.by.cov(),
absval.iwres.vs.ipred(),
absval.iwres.vs.pred(),
absval.wres.vs.cov.bw(),
absval.wres.vs.idv(),
absval.wres.vs.pred.by.cov(),
absval.wres.vs.pred(),
absval_delta_vs_cov_model_comp,
addit.gof(),
autocorr.cwres(),
autocorr.iwres(),
autocorr.wres(),
basic.gof(),
basic.model.comp(),
cat.dv.vs.idv.sb(),
cat.pc(),
cov.splom(),
cwres.dist.hist(),
cwres.dist.qq(),
cwres.vs.cov(),
cwres.vs.idv.bw(),
cwres.vs.idv(),
cwres.vs.pred.bw(),
cwres.vs.pred(),
cwres.wres.vs.idv(),
cwres.wres.vs.pred(),
dOFV.vs.cov(),
dOFV.vs.id(),
dOFV1.vs.dOFV2(),
data.checkout(),
dv.preds.vs.idv(),
dv.vs.idv(),
dv.vs.ipred.by.cov(),
dv.vs.ipred.by.idv(),
dv.vs.ipred(),
dv.vs.pred.by.cov(),
dv.vs.pred.by.idv(),
dv.vs.pred.ipred(),
dv.vs.pred(),
gof(),
ind.plots.cwres.hist(),
ind.plots.cwres.qq(),
ind.plots(),
ipred.vs.idv(),
iwres.dist.hist(),
iwres.dist.qq(),
iwres.vs.idv(),
kaplan.plot(),
par_cov_hist,
par_cov_qq,
parm.vs.cov(),
parm.vs.parm(),
pred.vs.idv(),
ranpar.vs.cov(),
wres.dist.hist(),
wres.dist.qq(),
wres.vs.idv.bw(),
wres.vs.idv(),
wres.vs.pred.bw(),
wres.vs.pred(),
xpose.VPC.both(),
xpose.VPC.categorical(),
xpose.VPC(),
xpose4-package
od = setwd(tempdir()) # move to a temp directory (cur.files <- dir()) # current files in temp directory simprazExample(overwrite=TRUE) # write files (new.files <- dir()[!(dir() %in% cur.files)]) # what files are new here? xpdb <- xpose.data(1) runsum(xpdb) file.remove(new.files) # remove these files setwd(od) # restore working directory
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