AlphaSimR: newPop – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

newPop

Create new Population

Description

Creates a new Pop-class from an object of MapPop-class or RawPop-class. The function is intended for creating initial populations from 'FOUNDERPOP' created by runMacs.

Usage

newPop(
  rawPop,
  mother = NULL,
  father = NULL,
  origM = NULL,
  origF = NULL,
  isDH = FALSE,
  simParam = NULL
)

Arguments

`rawPop`	an object of `MapPop-class` or `RawPop-class`
`mother`	optional id for mothers. Must match id in pedigree if using track pedigree.
`father`	optional id for fathers. Must match id in pedigree if using track pedigree.
`origM`	optional alternative id for mothers
`origF`	optional alternative id for fathers
`isDH`	optional value indicating if the individuals are doubled haploids and/or inbred founders
`simParam`	an object of `SimParam`

Value

Returns an object of Pop-class

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=2, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)

#Create population
pop = newPop(founderPop, simParam=SP)

AlphaSimR

Breeding Program Simulations

v0.13.0

MIT + file LICENSE

Authors

Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [aut] (<https://orcid.org/0000-0001-8008-2787>), John Hickey [aut] (<https://orcid.org/0000-0001-5675-3974>), Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), David Wilson [ctb]

Initial release

2020-10-20