A class handling isotope errors
This class defines a set of isotopes that should be included for error correction and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParIsotopeError' show(object) ## S4 method for signature 'msgfParIsotopeError' length(x) ## S4 method for signature 'msgfParIsotopeError' getMSGFpar(object) msgfParIsotopeError(range)
object |
An msgfParIsotopeError object |
x |
An msgfParIsotopeError object |
range |
An integer vector with isotopes |
For length() An integer.
For getMSGFpar() A string.
For msgfParIsotopeError() An msgfParIsotopeError object.
show: Short summary of msgfParIsotopeError object
length: Report the length of an msgfParIsotopeError
object
getMSGFpar: Get system compliant
function call
rangeAn integer vector with lower and upper bounds of isotopes to error correct
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParEnzyme-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParNtt-class,
msgfParProtocol-class,
msgfParTda-class,
msgfParTolerance-class,
msgfPar
isotopeError <- msgfParIsotopeError(c(0, 2))
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