A class handling parent ion tolerance
This class defines a parent ion tolerance and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParTolerance' show(object) ## S4 method for signature 'msgfParTolerance' length(x) ## S4 method for signature 'msgfParTolerance' getMSGFpar(object) msgfParTolerance(value, low, high, unit)
object |
An msgfParTolerance object |
x |
An msgfParTolerance object |
value |
A numeric giving the upper and lower bounds of the tolerance |
low |
A numeric giving the lower bounds of the tolerance |
high |
A numeric giving the higher bounds of the tolerance |
unit |
The unit used. Either 'ppm' or 'Da' |
For length() An integer.
For getMSGFpar() A string.
For msgfParTolerance() An msgfParTolerance object.
show: Short summary of msgfParTolerance object
length: Report the length of an msgfParTolerance object
getMSGFpar: Get system compliant
function call
unitThe unit used to define the tolerance
lowThe lower bound of the tolerance
highThe higher bound of the tolerance
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParEnzyme-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParIsotopeError-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParNtt-class,
msgfParProtocol-class,
msgfParTda-class, msgfPar
# Symmetric tolerance <- msgfParTolerance(20, unit='ppm') # Asymmetric tolerance <- msgfParTolerance(low=0.5, high=1.5, unit='Da')
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