A class handling cleavage specificity
This class defines cleavage specificity and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParNtt' show(object) ## S4 method for signature 'msgfParNtt' length(x) ## S4 method for signature 'msgfParNtt' getMSGFpar(object) msgfParNtt(value)
object |
An msgfParNtt object |
x |
An msgfParNtt object |
value |
An integer between 0 and 2 that specifies the specificity (2: full cleavage, 1: semi specific cleavage, 0: no specificity) |
For length() An integer.
For getMSGFpar() A string.
For msgfParNtt() An msgfParNtt object.
show: Short summary of msgfParNtt object
length: Report the length of an msgfParNtt object
getMSGFpar: Get system compliant function call
valueAn integer between 0 and 2 that specifies the specificity (2: full cleavage, 1: semi specific cleavage, 0: no specificity)
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParEnzyme-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParIsotopeError-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParProtocol-class,
msgfParTda-class,
msgfParTolerance-class,
msgfPar
ntt <- msgfParNtt(2)
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