A class handling protocol choice
This class defines a protocol and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParProtocol' show(object) ## S4 method for signature 'msgfParProtocol' length(x) ## S4 method for signature 'msgfParProtocol' getMSGFpar(object) msgfParProtocol(protocol)
object |
An msgfParProtocol object |
x |
An msgfParProtocol object |
protocol |
An integer or string specifying the protocol to use. |
For length() An integer.
For getMSGFpar() A string.
For msgfParProtocol() An msgfParProtocol object.
show: Short summary of msgfParProtocol object
length: Report the length of an msgfParProtocol object
getMSGFpar: Get system compliant
function call
protocolAn integer specifying a specific protocol type
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParEnzyme-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParIsotopeError-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParNtt-class,
msgfParTda-class,
msgfParTolerance-class,
msgfPar
protocol <- msgfParProtocol(0)
protocol <- msgfParProtocol('No protocol')Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.